DI-tector
v0.5
Defective interfering viral genomes detector for next generation sequencing data
by BEAUCLAIR Guillaume
DI-tector
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DI-tector
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DI-tector
v0.6
Parameters and Options
Upload *_count.txt file generated with DI-tector
OR
Paste 4 columns ";" delimited values as "DI type;BP;RI;Count" :
-
"DI type"
as
"5cb"
or
"3cb"
for 5' or 3' snap-back/copy-back, or
"insertion"
or
"deletion"
- "BP"
and
"RI"
as numeric values for
breacking point
and
reinitiation sites
- "Count"
as numeric value for
counted DI entities
Reference sequence:
Paste sequence or sequence length
[Optional] Add features:
Paste 3 columns ";" delimited values as "Short Name;Start;End]" :
[Optional] Zoom on area:
:
(Will be developped soon...)
[Optional] Scale dot plot:
(Will be developped soon...)
[Optional] Scale Chord diagram:
(Will be developped soon...)
[Optional] Scale lines diagram:
(Will be developped soon...)
[Optional] Sequence logo:
Nb. nucleotides before and after BR and RI
Other options:
Reference sequence inverted (5'>3' => 3'>5')
(For 3' and 5' sb/cb in line diagram)
Plot only 5' snap-back/copy-back
Plot only 3' snap-back/copy-back
Plot only DI with deletion
Plot only DI with insertion
Plot only DI with count >
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